species:   Clros
pid:       PID2250
parent:    cro-mir-45
paralog:   
locus:     CADEHS020000001.2:3000662-3000739
matures:   ['UGCAGGGCUCUUUUGGG', 'UUGGAGAGUGAGACAGG']
srr:       ERR5950930
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram CADEHS020000001.2:3000662-3000739

0 out of bounds
10 alignments
10 proper strand
10 stranded perfect matches

    ****************                                         **************** 
UUAUAUUGGAGAGUGAGACAGGACCAACGGGCUUGCUGGAUUAGCAUGGGUCAUUGAUUACUGCAGGGCUCUUUUGGG
.......(((((((....(((...(((.((.(((((((...))))).)).)).)))....)))....)))))))....
-------------------------------------------------------------UGCAGGGCUCUUUUGGG l=17 a=0 c
-----UUGGAGAGUGAGACAGG-------------------------------------------------------- l=17 a=0 c*
---------------------------------------------------------------CAGGGCUCUUUUGG- l=14 a=3 ma
------UGGAGAGUGAGACA---------------------------------------------------------- l=14 a=0 ma*

----------------------------------------------------------------AGGGCUCUUUUGG- l=13 a=2 
----------------------------------------------------------------AGGGCUCUUUUGGG l=14 a=2 
---------------------------------------------------------------CAGGGCUCUUUUGG- l=14 a=3 (ma)
---------------------------------------------------------------CAGGGCUCUUUUGGG l=15 a=2 
-----------------------------------------------------------ACUGCAGGGCU-------- l=11 a=1 

mb-01010
ax-1011101
ku-01
ss-101011101110
fn-111
